Kamyar Zeinalipour GitHub Hugging Face

Publications / 2026

PharMistral: Drug generation for novel protein targets by Mistral Large Language Model

Asma Bendjeddou, Kamyar Zeinalipour, Dalal Bardou, Marco Maggini, Franco Scarselli, Monica Bianchini

Computer Methods and Programs in Biomedicine Update, vol. 10 (2026), article 100257, Elsevier
Published online on , 1 citation on Google Scholar

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In short

The paper presents PharMistral, a Mistral-7B model first trained on over 300,000 human protein sequences and over 1 million drug-like SMILES, then fine-tuned on about 300,000 protein-ligand pairs from ChEMBL to generate candidate drug molecules directly from a protein sequence. On unseen proteins, 99.5% of generated molecules were chemically valid, and 3,383 unique molecules passed drug-likeness and toxicity filters.

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Cite

@article{Bendjeddou_2026,
 title={PharMistral: Drug generation for novel protein targets by Mistral Large Language Model},
 volume={10},
 ISSN={2666-9900},
 url={http://dx.doi.org/10.1016/j.cmpbup.2026.100257},
 DOI={10.1016/j.cmpbup.2026.100257},
 journal={Computer Methods and Programs in Biomedicine Update},
 publisher={Elsevier BV},
 author={Bendjeddou, Asma and Zeinalipour, Kamyar and Bardou, Dalal and Maggini, Marco and Scarselli, Franco and Bianchini, Monica},
 year={2026},
 month=Dec,
 pages={100257} 
}

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